Plot the enriched pathways from gene lists

Source: R/COR.R

This function plots pathway enrichment analysis results of the gene from each cluster in heatmap generated from .get_cluster_genes().

It should not be used directly, only inside .plot_Corr_RNAseq_TCGA_GTEX() function.

Side effects:

(1) dotplot on screen and as pdf file to show the enriched pathways in the genes from different clusters in the heatmap

.pathway_dotplot(df, pathway, tissue_type)

Arguments

df

pathway enrichment analysis results generated from .plot_Corr_RNAseq_TCGA_GTEX()

pathway

pathway name, "GO", ""REACTOME", "KEGG"

tissue_type

tissue type, the same argument of .plot_Corr_RNAseq_TCGA_GTEX()

See also

Other helper function for correlation analysis plotting: .CORs_coeff_heatmap(), .CORs_summary_bargraph(), .CORs_vennplot()

Examples

if (FALSE) {
.pathway_dotplot(df = ck.REACTOME, pathway = "REACTOME",
 tissue_type = tissue_type)
}