Correlation between CCLE RNAseq and proteomics data

Source: R/RNAProCorr.R

An internal composite function generates correlation scatter plot for eIF4F RNAseq and proteomics data from CCLE.

.plot_scatter_RNApro_CCLE(gene_name)

Arguments

gene_name

gene name

Details

This function

  • merges the CCLE RNAseq values of EIF4F genes in the data frame prepared from .get_CCLE_RNAseq_subset(), the annotation data of CCLE CCLE_Anno, and proteomics data of the same EIF4F protein in the data frame prepared from .get_CCLE_Proteomics_subset().

  • uses the combined data to calculate the correlation coefficients between protein and RNA levels, and plot the result with the function .RNApro_scatterplot()

This function is not accessible to the user and will not show at the users' workspace. It can only be called by the exported EIF4F_RNA_pro_correlation() function.

Side effects:

(1) scatter plot to show correlation between RNA and protein of input gene_name expressions in CCLE samples

See also

Other composite function to call RNA protein correlation analysis and plotting: .plot_scatter_RNApro_LUAD()

Examples

if (FALSE) {
lapply(c("EIF4G1", "EIF4A1", "EIF4E"), .plot_scatter_RNApro_CCLE)
}