Set output directories

A wrapper function sets up the output directories

initialize_dir()

Details

Side effects:

(1) output directory for CNV analysis results

• ~/Documents/EIF_output/CNV

(2) output directory for differential gene expression and ratio analysis results

• ~/Documents/EIF_output/DEG

(3) output directories for survival analysis results

• ~/Documents/EIF_output/Survival/KM

• ~/Documents/EIF_output/Survival/CoxPH

(4) output directory for PCA results

• ~/Documents/EIF_output/PCA/TCGA_tumor+GTEX_healthy

• ~/Documents/EIF_output/PCA/TCGA_tumor

• ~/Documents/EIF_output/PCA/GTEX_healthy

• ~/Documents/EIF_output/PCA/matched_tumor_and_healthy

• ~/Documents/EIF_output/PCA/LUAD

(5) output directory for analysis results on EIF4F correlating genes

• ~/Documents/EIF_output/CORs

(6) output directory for correlation analysis between RNA and protein levels

• ~/Documents/EIF_output/RNApro

(7) output directory for co-expression analysis among EIF4F subunits and their differential expression

• ~/Documents/EIF_output/Proteomics/COEXP

• ~/Documents/EIF_output/Proteomics/DIFFEXP

(8) output directory for processed datasets used as global variables their differential expression

• ~/Documents/EIF_output/ProcessedData

Examples

if (FALSE) {
initialize_dir()
}