Box plots of the CNV ratios in tumors vs adjacent normals

This function generates boxplot for CNV ratios in tumors vs adjacent normals from individual TCGA cancer types.

.CNVratio_boxplot(df)

Arguments

df

.EIF_CNVratio_ind_cancer generated inside .plot_boxgraph_CNVratio_TCGA()

Details

This plot function uses dataset .TCGA_CNVratio_sampletype_subset generated from .plot_boxgraph_CNVratio_TCGA() function. It should not be used directly, only inside .plot_boxgraph_CNVratio_TCGA() function.

Side effects:

(1) boxplot on screen and as saved pdf files to show CNV ratios in tumors vs adjacent normals from individual TCGA cancer types.

See also

Other helper function for CNV data plotting: .CNV_barplot(), .CNV_sum_barplot(), .matrix_plot()

Examples

if (FALSE) {
lapply(.EIF_CNVratio_ind_cancer, .CNVratio_boxplot)
}