Stacked bar plots of the CNV status

This function generates stacked bar plots for CNV status of each gene in an individual cancer type.

.CNV_barplot(df)

Arguments

df

.EIF_CNV_ind_cancer generated inside .plot_bargraph_CNV_TCGA()

Details

This plot function uses dataset generated from .CNV_ind_cancer() function

It should not be used directly, only inside .plot_bargraph_CNV_TCGA() function.

Side effect: stacked bar plots on screen and as saved pdf files to show CNV status of each gene in an individual cancer type.

See also

Other helper function for CNV data plotting: .CNV_sum_barplot(), .CNVratio_boxplot(), .matrix_plot()

Examples

if (FALSE) {
lapply(.EIF_CNV_ind_cancer, .CNV_barplot)
}