Calculates the frequency of CNV status in individual TCGA cancer types

a data analysis function that calculates the frequency of CNV status for each EIF4F gene in individual TCGA cancer types.

.CNV_ind_cancer(df, gene)

Arguments

df

.TCGA_CNV_sampletype_subset generated inside .plot_bargraph_CNV_TCGA()

gene

one gene from the input argument of .plot_bargraph_CNV_TCGA()

Value

a list with the summary table of CNV in individual TCGA cancer types and gene name

Details

It should not be used directly, only inside .plot_bargraph_CNV_TCGA() function.

See also

Other helper function for CNV data analysis: .CNV_all_cancer(), .CNVratio_tumor()

Examples

if (FALSE) {
lapply(EIF, .CNV_ind_cancer, df = .TCGA_CNV_sampletype_subset)
}