Calculates the frequency of CNV status in all TCGA cancer types combined

This function calculates the frequency of each CNV status across tumors in all TCGA cancer types for every EIF4F gene.

.CNV_all_cancer(df)

Arguments

df

.TCGA_CNV_sampletype_subset generated inside .plot_bargraph_CNV_TCGA()

Value

a summary table ranking the EIF4F gene by the frequencies of duplication (CNV threshold labeled as “1” in the dataset)

Details

It should not be used directly, only inside .plot_bargraph_CNV_TCGA() function.

See also

Other helper function for CNV data analysis: .CNV_ind_cancer(), .CNVratio_tumor()

Examples

if (FALSE) {
.CNV_all_cancer(.TCGA_CNV_sampletype_subset)
}