Calculates the frequency of CNV status in all TCGA cancer types combined

This function selects the CNV ratio data in tumors vs adjacent normals from individual TCGA cancer types for each input gene.

.CNVratio_tumor(df, gene)

Arguments

df

.TCGA_CNVratio_sampletype_subset generated inside .plot_boxgraph_CNVratio_TCGA()

gene

one gene from the input argument of .plot_boxgraph_CNVratio_TCGA()

Value

a list with the data frame of CNV ratio of the input gene in individual TCGA cancer types and gene name

Details

It should not be used directly, only inside .plot_boxgraph_CNVratio_TCGA() function.

See also

Other helper function for CNV data analysis: .CNV_all_cancer(), .CNV_ind_cancer()

Examples

if (FALSE) {
lapply(EIF, .CNVratio_tumor, df = .TCGA_CNVratio_sampletype_subset)
}