Read the RNAseq data from TCGA

A helper function reads the RNAseq data from TCGA EB++AdjustPANCAN_IlluminaHiSeq_RNASeqV2.geneExp.xena.

.get_TCGA_RNAseq()

Value

a data frame that contains the RNAseq data from TCGA

Details

This function removes possible duplicated tumor samples and samples with NAs in the dataset. It should not be used directly, only inside initialize_survival_data() function.

See also

Other helper function for data initialization: .get_TCGA_CNV_ratio(), .get_TCGA_CNV_value(), .get_TCGA_CNV(), .get_TCGA_GTEX_RNAseq()

Examples

if (FALSE) {
.get_TCGA_RNAseq()
}