Perform all CNV related analysis and generate plots

A wrapper function to call all internal composite functions for CNV analysis with provided inputs

EIF4F_CNV_analysis()

Details

This function run three internal composite functions together with inputs:

• .plot_bargraph_CNV_TCGA()

• .plot_matrix_CNVcorr_TCGA()

• .plot_boxgraph_CNVratio_TCGA()

Side effect:

(1) stacked bar plots on screen and as pdf file to show the summary table of the CNV statuses of all EIF genes in TCGA tumors

(2) stacked bar plots on screen and as saved pdf files to show CNV status of each EIF gene from an individual cancer type

(3) correlation matrix plot on screen and as saved pdf files to show co-occurrence of EIF genes CNV status in TCGA tumors

(4) box plots on screen and as saved pdf files to show CNV ratio of EIF genes in TCGA tumors vs normals

See also

Other wrapper function to call all composite functions with inputs: EIF4F_Corrgene_analysis(), EIF4F_DEG_analysis(), EIF4F_PCA(), EIF4F_Proteomics_analysis(), EIF4F_RNA_pro_correlation(), EIF4F_Survival_analysis()

Examples

if (FALSE) {
EIF4F_CNV_analysis()
}