Perform differential gene expression or ratio analysis and generate plots

A wrapper function to call all composite functions for differential gene expression or ratio analysis with inputs

EIF4F_DEG_analysis()

Details

This function run two composite functions together, with inputs:

• .plot_boxgraph_RNAseq_TCGA()

• .plot_boxgraph_RNAratio_TCGA()

Side effects:

(1) box plots on screen and as pdf file to compare relative gene expression in across all TCGA cancer types

(2) box plots on screen and as pdf file to show differential gene expression in tumors vs NATs in TCGA cancer types

(3) violin plots on screen and as pdf file to show differential gene expression in primary, metastatic tumors vs adjacent normal tissues from all combined TCGA cancer types

(4) box plots on screen and as pdf file to show differential RNA ratios in tumors vs NATs in TCGA cancer type

(5) violin plots on screen and as pdf file to show differential gene ratios in primary, metastatic tumors vs adjacent normal tissues from all combined TCGA cancer types

See also

Other wrapper function to call all composite functions with inputs: EIF4F_CNV_analysis(), EIF4F_Corrgene_analysis(), EIF4F_PCA(), EIF4F_Proteomics_analysis(), EIF4F_RNA_pro_correlation(), EIF4F_Survival_analysis()

Examples

if (FALSE) {
EIF4F_DEG_analysis()
}