Perform differential correlation analyses and generate plots

Source: R/COR.R

A wrapper function to call all composite functions for PCA with inputs

EIF4F_Corrgene_analysis()

Details

This function run the composite functions .plot_Corr_RNAseq_TCGA_GTEX() with two inputs.

  • "All" for all cancer types of TCGA and all healthy tissues types of GTEx.

  • "Lung" for lung cancer types (LUAD and LUSC of TCGA) and healthy lung tissues of GTEx

Side effects:

(1) Venn diagrams on screen and as pdf file to show the overlap of EIF correlating genes identify from RNAseq of tissue_type

(2) bar graphs on screen and as pdf file to show the numbers of identified correlating genes for each EIF4F subunit identify from RNAseq of tissue_type

(3) heatmap on screen and as pdf file to show correlation strength and clustering pattern of EIF4F correlating genes.

(4) dotplot on screen and as pdf file to show the enriched pathways in the genes from different clusters in the heatmap

See also

Other wrapper function to call all composite functions with inputs: EIF4F_CNV_analysis(), EIF4F_DEG_analysis(), EIF4F_PCA(), EIF4F_Proteomics_analysis(), EIF4F_RNA_pro_correlation(), EIF4F_Survival_analysis()

Examples

if (FALSE) {
EIF4F_Corrgene_analysis()
}