Analyzes differential RNA ratios in primary, metastatic tumors vs adjacent normal tissues from all TCGA cancer types combined

Source: R/DEG.R

This function selects the RNA ratio data from TCGA samples including tumor samples that are labeled as metastatic, primary tumor, and solid tissue normal for comparison.

It should not be used directly, only inside .plot_boxgraph_RNAratio_TCGA() function.

.RNAratio_tumortype(df, gene_ratio)

Arguments

df

.RNAratio_tumortype(.RNAratio_data) generated inside .plot_boxgraph_RNAratio_TCGA()

gene_ratio

Value

a data frame of differential RNA ratios in tumors vs adjacent normal tissues from individual TCGA cancer types

See also

Other helper function for differential expression analysis: .RNAratio_calculation(), .RNAratio_selection(), .RNAseq_all_gene(), .RNAseq_ind_gene(), .RNAseq_tumortype()