Analyzes differential gene expression in tumors vs adjacent normal tissues

Source: R/DEG.R

A helper function selects the RNAseq data of each EIF genes from TCGA tumors and solid tissue normal samples in .TCGA_GTEX_RNAseq_sampletype_subset. It should not be used directly, only inside .plot_boxgraph_RNAseq_TCGA() function.

.RNAseq_ind_gene(df, gene)

Arguments

df

.TCGA_GTEX_RNAseq_sampletype_subset generated inside .plot_boxgraph_RNAseq_TCGA()

gene

one gene from the input argument of .plot_boxgraph_RNAseq_TCGA()

Value

a data frame of differential gene expression in tumors vs adjacent normal tissues from individual TCGA cancer types

See also

Other helper function for differential expression analysis: .RNAratio_calculation(), .RNAratio_selection(), .RNAratio_tumortype(), .RNAseq_all_gene(), .RNAseq_tumortype()