Compares expressions among genes in tumor samples

This function selects the RNAseq data from TCGA samples, excludes samples with label of Solid Tissue Normal and ranks the genes by their mRNA expression. It should not be used directly, only inside .plot_boxgraph_RNAseq_TCGA() function.

.RNAseq_all_gene(df)

Arguments

df

.TCGA_GTEX_RNAseq_sampletype_subset generated inside .plot_boxgraph_RNAseq_TCGA()

Value

a data frame ranking genes by their mRNA expressions in lung adenocarcinoma

See also

Other helper function for differential expression analysis: .RNAratio_calculation(), .RNAratio_selection(), .RNAratio_tumortype(), .RNAseq_ind_gene(), .RNAseq_tumortype()

Examples

if (FALSE) {
.RNAseq_all_gene(.TCGA_GTEX_RNAseq_sampletype_subset)
}