Box plots of differential gene expression across tumors

Source: R/DEG.R

This function takes the output of .RNAseq_ind_gene() and generate box plots for differential gene expression in tumors vs NATs in TCGA cancer types This function should not be used directly, only inside .plot_boxgraph_RNAseq_TCGA()function.

Side effects:

(1) box plots on screen and as pdf file to show differential gene expression in tumors vs NATs in TCGA cancer types

.RNAseq_boxplot(df)

Arguments

df

output dataset generated from .RNAseq_ind_gene() function

See also

Other helper function for differential expression plotting: .RNAratio_boxplot(), .RNAseq_grouped_boxplot(), .violinplot()