Grouped box plots of RNA expression across tumors

Source: R/DEG.R

This function takes the output of .RNAseq_all_gene() function and generate box plots of differential gene expression across all TCGA cancer types This function should not be used directly, only inside .plot_boxgraph_RNAseq_TCGA()function.

Side effect: box plots on screen and as pdf file to compare relative expression of EIF genes across all TCGA cancer type

.RNAseq_grouped_boxplot(df)

Arguments

df

output dataset from .RNAseq_all_gene(.TCGA_GTEX_RNAseq_sampletype_subset), which was generated inside .plot_boxgraph_RNAseq_TCGA()function.

See also

Other helper function for differential expression plotting: .RNAratio_boxplot(), .RNAseq_boxplot(), .violinplot()